Search results for " Plastid"

showing 7 items of 7 documents

Hundreds of nuclear and plastid loci yield novel insights into orchid relationships.

2021

Pérez-Escobar, Oscar Alejandro, Dodsworth, Steven, Bogarín, Diego, Bellot, Sidonie, Balbuena, Juan A, Schley, Rowan J, Kikuchi, Izai A, Morris, Sarah K, Epitawalage, Niroshini, Cowan, Robyn, Maurin, Olivier, Zuntini, Alexandre, Arias, Tatiana, Serna-Sánchez, Alejandra, Gravendeel, Barbara, Torres Jimenez, Maria Fernanda, Nargar, Katharina, Chomicki, Guillaume, Chase, Mark W, Leitch, Ilia J, Forest, Félix, Baker, William J (2021): Hundreds of nuclear and plastid loci yield novel insights into orchid relationships. American journal of botany 108 (7): 1166-1180, DOI: http://doi.org/10.5281/zenodo.7778176

OrchidaceaeCharacter evolutionNuclear genemultilocus phylogenetic treesbiologyPhylogenetic treenuclearplastid discordancefungifood and beveragesAngiosperms353Plant ScienceBiodiversitybiology.organism_classificationGenomeDNA sequencingrecombinationNuclear- plastid discordanceincongruenceEvolutionary biologyGeneticsSupermatrixPlastidOrchidaceaeEcology Evolution Behavior and SystematicsTaxonomy
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Deploying Genome Editing Tools for Dissecting the Biology of Nut Trees

2019

Walnuts are among the most important nut crops grown in temperate regions of the world. Commercial production in California, and increasingly worldwide, relies on only few clonally grafted scion genotypes, particularly “Chandler,” and more recently clonally propagated disease-resistant rootstocks. Diseases, nematodes, insect pests, abiotic stresses, and other nutritional and environmental factors, can reduce walnut productivity and quality, affecting grower profitability. The California Walnut Breeding Program at UC Davis has developed and released scion cultivars and rootstocks to help address some of these problems. Sequencing of the walnut genome is expected to speed walnut breeding by f…

Phytoene desaturaseCRISPR-Cas9; gene-editing; gRNA; nut crops; oxidative stress; phytoene desaturase; plastid healthBreeding programnut cropgRNAgene-editinglcsh:TX341-641HorticultureManagement Monitoring Policy and LawBiologyGenomeCropGenome editingSettore AGR/07 - Genetica Agrariaoxidative stressGlobal and Planetary Changeoxidative strelcsh:TP368-456Ecologybusiness.industryfungifood and beveragesPhenotypic traitBiotechnologySettore AGR/03 - Arboricoltura Generale E Coltivazioni Arboreelcsh:Food processing and manufacturephytoene desaturaseplastid healthCRISPR-Cas9nut cropsRootstockbusinesslcsh:Nutrition. Foods and food supplyAgronomy and Crop ScienceHickory nutFood Science
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Presence of multiple group I introns closely related to bacteria and fungi in plastid 23S rRNAs of lichen-forming Trebouxia

2009

The chloroplast-encoded large subunit ribosomal RNA gene of several free-living green algae contains group I introns at Escherichia coli genic positions 1917, 1931, 1951, and 2449. Herein we report the presence of group I introns at these positions within the chloroplast-encoded large subunit ribosomal RNA gene of several lichen-forming green algae belonging to the Trebouxia genus. In contrast to the introns inserted at position 2449, all introns inserted at positions 1917, 1931, and 1951 contained LAGLIDADG homing endonuclease genes. Phylogenetic analyses show that: (i) introns inserted at positions 1917, 1931, and 1951 are closely related to introns located at homologous insertion sites i…

Trebouxia ssp. ; Group I introns ; Plastid 23S rRNA ; Lichens ; Horizontal transferTrebouxia sspLichens:CIENCIAS DE LA VIDA::Microbiología [UNESCO]UNESCO::CIENCIAS DE LA VIDAPlastid 23S rRNAHorizontal transferUNESCO::CIENCIAS DE LA VIDA::MicrobiologíaTrebouxia ssp; Group I introns; Plastid 23S rRNA; Lichens; Horizontal transferGroup I introns
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The complete plastid genome of the middle Asian endemic of Stipa lipskyi (Poaceae)

2016

AbstractThe structure of the Stipa lipskyi (GenBank accession no. KT692644) plastid genome is similar to that of closely related Poaceae species: it has a total length of 137 755 bp, the base composition of the plastome is the following: A (30.7%), C (19.3%), G (19.4%) and T (30.5%). The S. lipskyi plastid genome contains 71 genes, excluding second IR region. A complete plastome sequence of S. lipskyi will help the development of primers for examining phylogeny and hybridization events in this taxonomically difficult genus.

0106 biological sciences0301 basic medicineGenome PlastidBiologyGenes PlantPoaceae010603 evolutionary biology01 natural sciencesGenomeEvolution Molecular03 medical and health sciencesGenusPhylogeneticsBotanyGeneticsplastid genomePlastidMolecular BiologyGeneHybridizationPhylogenyBase CompositionStipaSequence Analysis DNAbiology.organism_classification030104 developmental biologyChloroplast DNAGenBankStipa
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PHOSPHOROUS SEED COATING AFFECT TO GERMINATION, PHOTOSYNTHETIC PIGMENTS AND YIELD OF RAPE

2005

Rape (Brassica napus L. var. napus) is long ago-known vegetable of Brassicaceae in agriculture. It is important and valuable oil, forage, green-fertiliser and nectar plant. The experience of last years shows that rape is suitable for growing in conditions of Latvia, but investigations about its cultivars and growing technologies are not wide enough.The phosporus-fertilizer adding in the rape plantations is of great importance for increasing of its productivity. With the aim to reduce the expenses the phosphorus treated rape seeds are made use.In our investigations the velocity of seeds germination, germinating viability, germinating vigour, green pigments” quantity in seed-lobes and seeds” …

PhosphorusBrassicachemistry.chemical_elementfood and beveragesBrassicaceaeForageBiologyPhotosynthesisbiology.organism_classificationchemistry.chemical_compoundHorticultureAgronomychemistryGerminationChlorophyllspring rape; mineral nutrition; seed germination; pigments of green plastids; yieldCultivarEnvironment. Technology. Resources.
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Organelle protein changes in arbuscular mycorrhizal Medicago truncatula roots as deciphered by subcellular proteomics

2019

Prod 2020-8c SPE IPM INRA UB CNRS; The roots of most land plants can enter a symbiotic relationship with arbuscular mycorrhizal (AM) soil‐borne fungi belonging to the phylum Glomeromycota, which improves the mineral nutrition of the host plant. The fungus enters the root through the epidermis and grows into the cortex where it differentiates into a highly branched hyphal structure called the arbuscule. The role of the plant membrane system as the agent for cellular morphogenesis and signal/nutrient exchanges is especially accentuated during AM endosymbiosis. Notably, fungal hyphae are always surrounded by the host membrane, which is referred to as the perifungal membrane around intracellula…

0106 biological sciencesRhizophagus irregularis[SDV]Life Sciences [q-bio]BiologyProteomicsplasma membrane01 natural sciences03 medical and health sciencesroot plastidsBotanyOrganelle[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyRhizophagus irregularismicrosomesShotgun proteomics030304 developmental biology0303 health sciencesspectral countingSpectral countingfungifood and beveragesbiology.organism_classificationMedicago truncatulashotgun proteomicscellular fractionation methods[SDE]Environmental SciencesArbuscular mycorrhizal010606 plant biology & botany
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Prokaryotic symbiotic consortia and the origin of nucleated cells: A critical review of Lynn Margulis hypothesis.

2021

The publication in the late 1960s of Lynn Margulis endosymbiotic proposal is a scientific milestone that brought to the fore of evolutionary discussions the issue of the origin of nucleated cells. Although it is true that the times were ripe, the timely publication of Lynn Margulis' original paper was the product of an intellectually bold 29-years old scientist, who based on the critical analysis of the available scientific information produced an all-encompassing, sophisticated narrative scheme on the origin of eukaryotic cells as a result of the evolution of prokaryotic consortia and, in bold intellectual stroke, put it all in the context of planetary evolution. A critical historical reas…

Statistics and ProbabilityHistoryCentromereGenome PlastidMicrobial ConsortiaGene transferContext (language use)General Biochemistry Genetics and Molecular Biology03 medical and health sciences0302 clinical medicineCell MovementSymbiosisGene transferNon-mendelian inheritance030304 developmental biologyOrganelles0303 health sciencesEndosymbiosisEndosymbiosisApplied MathematicsNarrative historyGeneral MedicineBiological EvolutionGenealogyBasal BodiesStructural heredityEukaryotic CellsAsgard archaeaProkaryotic CellsMicrobial consortiaFlagellaModeling and SimulationGenome MitochondrialPlanetary Evolution030217 neurology & neurosurgeryBio Systems
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